Publications



Arbeiten von MegaSyn Mitgliedern. MegaSyn Mitglieder sind korrespondiere Autoren.

A superfolder variant of pH-sensitive pHluorin for in vivo pH measurements in the endoplasmic reticulum
Sci Rep 2018 Aug 10;8(1):11985
Reifenrath M, Boles E
Rhabdopeptide/Xenortide-like Peptides from Xenorhabdus innexi with Terminal Amines Showing Potent Antiprotozoal Activity
Org Lett 2018 Aug 10
Zhao L, Kaiser M, Bode HB
NMR resonance assignments for the SAM/SAH-binding riboswitch RNA bound to S-adenosylhomocysteine
Biomol NMR Assign 2018 Jul 26
Weickhmann AK, Keller H, Duchardt-Ferner E, Strebitzer E, Juen MA, Kremser J, Wurm JP, Kreutz C, Wöhnert J
Bayesian inference of rotor ring stoichiometry from electron microscopy images of archaeal ATP synthase
Microscopy (Oxf) 2018 Jul 19
Cossio P, Allegretti M, Mayer F, Müller V, Vonck J, Hummer G
Structure of the bifunctional cryptochrome aCRY from Chlamydomonas reinhardtii
Nucleic Acids Res 2018 Jul 19
Franz S, Ignatz E, Wenzel S, Zielosko H, Putu EPGN, Maestre-Reyna M, Tsai MD, Yamamoto J, Mittag M, Essen LO
Adenine protonation enables cyclic-di-GMP binding to cyclic-GAMP sensing riboswitches
RNA 2018 Jul 13
Keller H, Weickhmann AK, Bock T, Wohnert J
Hydrodynamics of Diffusion in Lipid Membrane Simulations
Phys Rev Lett 2018 Jun 29;120(26):268104
Vögele M, Köfinger J, Hummer G
Single-cell cloning enables the selection of more productive Drosophila melanogaster S2 cells for recombinant protein expression
Biotechnol Rep (Amst) 2018 Jul 3;19:e00272
Zitzmann J, Schreiber C, Eichmann J, Bilz RO, Salzig D, Weidner T, Czermak P
Molecular dynamics simulations of carbon nanotube porins in lipid bilayers
Faraday Discuss 2018 Jul 5
Vögele M, Köfinger J, Hummer G
Engineering strategies for rational polyketide synthase design
Nat Prod Rep 2018 Jun 25
Klaus M, Grininger M
NMR resonance assignments for a ProQ homolog from Legionella pneumophila
Biomol NMR Assign 2018 Jun 22
Immer C, Hacker C, Wöhnert J
An engineered fatty acid synthase combined with a carboxylic acid reductase enables de novo production of 1-octanol in Saccharomyces cerevisiae
Biotechnol Biofuels 2018 Jun 1;11:150
Henritzi S, Fischer M, Grininger M, Oreb M, Boles E
Characterization of the small flavin-binding dodecin in the roseoflavin producer Streptomyces davawensis
Microbiology 2018 Jun;164(6):908-919
Ludwig P, Sévin DC, Busche T, Kalinowski J, Bourdeaux F, Grininger M, Mack M
Refining the Natural Product Repertoire in Entomopathogenic Bacteria
Trends Microbiol 2018 May 22
Tobias NJ, Shi YM, Bode HB
Rotational Diffusion Depends on Box Size in Molecular Dynamics Simulations
J Phys Chem Lett 2018 Jun 7;9(11):2874-2878
Linke M, Köfinger J, Hummer G
Structure, mechanism, and regulation of the chloroplast ATP synthase
Science 2018 May 11;360(6389)
Hahn A, Vonck J, Mills DJ, Meier T, Kühlbrandt W
Combining Promiscuous Acyl-CoA Oxidase and Enoyl-CoA Carboxylase/Reductases for Atypical Polyketide Extender Unit Biosynthesis
Cell Chem Biol 2018 Jul 19;25(7):833-839
Vögeli B, Geyer K, Gerlinger PD, Benkstein S, Cortina NS, Erb TJ
Sub-nanosecond tryptophan radical deprotonation mediated by a protein-bound water cluster in class II DNA photolyases
Chem Sci 2017 Dec 11;9(5):1200-1212
Müller P, Ignatz E, Kiontke S, Brettel K, Essen LO
Combined Approach of Backbone Amide Linking and On-Resin N-Methylation for the Synthesis of Bioactive and Metabolically Stable Peptides
J Med Chem 2018 May 10;61(9):3930-3938
Wesche F, Adihou H, Kaiser A, Wurglics M, Schubert-Zsilavecz M, Kaiser M, Bode HB
An engineered Calvin-Benson-Bassham cycle for carbon dioxide fixation in Methylobacterium extorquens AM1
Metab Eng 2018 May;47:423-433
Schada von Borzyskowski L, Carrillo M, Leupold S, Glatter T, Kiefer P, Weishaupt R, Heinemann M, Erb TJ
Flavin Storage and Sequestration by Mycobacterium tuberculosis Dodecin
ACS Infect Dis 2018 Jul 13;4(7):1082-1092
Bourdeaux F, Hammer CA, Vogt S, Schweighöfer F, Nöll G, Wachtveitl J, Grininger M
The benzodiazepine-like natural product tilivalline is produced by the entomopathogenic bacterium Xenorhabdus eapokensis
Likelihood-based structural analysis of electron microscopy images
Dielectric Spectroscopy and Optical Density Measurement for the Online Monitoring and Control of Recombinant Protein Production in Stably Transformed Drosophila melanogaster S2 Cells
Sensors (Basel) 2018 Mar 18;18(3)
Zitzmann J, Weidner T, Eichner G, Salzig D, Czermak P
Retinal isomerization and water-pore formation in channelrhodopsin-2
Structure of the catalytic F(1) head of the F(1)-F(o) ATP synthase from Trypanosoma brucei
Conserved in situ arrangement of complex I and III(2) in mitochondrial respiratory chain supercomplexes of mammals, yeast, and plants
Natural Product Diversification Mediated by Alternative Transcriptional Starting
Georatusin, a Specific Antiparasitic Polyketide-Peptide Hybrid from the Fungus Geomyces auratus
Org Lett 2018 Mar 16;20(6):1563-1567
Shi YM, Richter C, Challinor VL, Grün P, Girela Del Rio A, Kaiser M, Schüffler A, Piepenbring M, Schwalbe H, Bode HB
Cryo-electron tomography analyses of terminal organelle mutants suggest the motility mechanism of Mycoplasma genitalium
Mol Microbiol 2018 May;108(3):319-329
Seybert A, Gonzalez-Gonzalez L, Scheffer MP, Lluch-Senar M, Mariscal AM, Querol E, Matthaeus F, Piñol J, Frangakis AS
Mitochondrial Respiratory Chain Complexes
Subcell Biochem 2018;87:167-227
Sousa JS, D'Imprima E, Vonck J
De novo design and engineering of non-ribosomal peptide synthetases
Nat Chem 2018 Mar;10(3):275-281
Bozhüyük KAJ, Fleischhacker F, Linck A, Wesche F, Tietze A, Niesert CP, Bode HB
Metabolomics-based chemotaxonomy of root endophytic fungi for natural products discovery
Environ Microbiol 2018 Mar;20(3):1253-1270
Maciá-Vicente JG, Shi YN, Cheikh-Ali Z, Grün P, Glynou K, Kia SH, Piepenbring M, Bode HB
Fully Anisotropic Rotational Diffusion Tensor from Molecular Dynamics Simulations
J Phys Chem B 2018 May 31;122(21):5630-5639
Linke M, Köfinger J, Hummer G
Chemical language and warfare of bacterial natural products in bacteria-nematode-insect interactions
Engineering of hydroxymandelate synthases and the aromatic amino acid pathway enables de novo biosynthesis of mandelic and 4-hydroxymandelic acid with Saccharomyces cerevisiae
Metab Eng 2018 Jan;45:246-254
Reifenrath M, Boles E
Characterization of the Polyspecific Transferase of Murine Type I Fatty Acid Synthase (FAS) and Implications for Polyketide Synthase (PKS) Engineering
ACS Chem Biol 2018 Mar 16;13(3):723-732
Rittner A, Paithankar KS, Huu KV, Grininger M
High titer oncolytic measles virus production process by integration of dielectric spectroscopy as online monitoring system
Biotechnol Bioeng 2018 May;115(5):1186-1194
Grein TA, Loewe D, Dieken H, Salzig D, Weidner T, Czermak P
Molecular Basis for Converting (2S)-Methylsuccinyl-CoA Dehydrogenase into an Oxidase
Molecules 2017 Dec 28;23(1)
Burgener S, Schwander T, Romero E, Fraaije MW, Erb TJ
Structural basis for substrate specificity of methylsuccinyl-CoA dehydrogenase, an unusual member of the acyl-CoA dehydrogenase family
J Biol Chem 2018 Feb 2;293(5):1702-1712
Schwander T, McLean R, Zarzycki J, Erb TJ
Structural basis of proton translocation and force generation in mitochondrial ATP synthase
Elife 2017 Dec 6;6
Klusch N, Murphy BJ, Mills DJ, Yildiz Ö, Kühlbrandt W
Optimisation of trans-cinnamic acid and hydrocinnamyl alcohol production with recombinant Saccharomyces cerevisiae and identification of cinnamyl methyl ketone as a by-product
FEMS Yeast Res 2017 Dec 1;17(8)
Gottardi M, Grün P, Bode HB, Hoffmann T, Schwab W, Oreb M, Boles E
Reassessment of inclusion body-based production as a versatile opportunity for difficult-to-express recombinant proteins
Crit Rev Biotechnol 2018 Aug;38(5):729-744
Hoffmann D, Ebrahimi M, Gerlach D, Salzig D, Czermak P
Classical Molecular Dynamics with Mobile Protons
Scaffolding the cup-shaped double membrane in autophagy
PLoS Comput Biol 2017 Oct 24;13(10):e1005817
Bahrami AH, Lin MG, Ren X, Hurley JH, Hummer G
Dynamic Histogram Analysis To Determine Free Energies and Rates from Biased Simulations
J Chem Theory Comput 2017 Dec 12;13(12):6328-6342
Stelzl LS, Kells A, Rosta E, Hummer G
Transition path sampling of rare events by shooting from the top
J Chem Phys 2017 Oct 21;147(15):152716
Jung H, Okazaki KI, Hummer G
Insights into Cotranslational Membrane Protein Insertion by Combined LILBID-Mass Spectrometry and NMR Spectroscopy
Anal Chem 2017 Nov 21;89(22):12314-12318
Peetz O, Henrich E, Laguerre A, Löhr F, Hein C, Dötsch V, Bernhard F, Morgner N
NMR experiments for the rapid identification of P=O···H-X type hydrogen bonds in nucleic acids
J Biomol NMR 2017 Oct;69(2):101-110
Duchardt-Ferner E, Wöhnert J
Natural product diversity associated with the nematode symbionts Photorhabdus and Xenorhabdus
Nat Microbiol 2017 Dec;2(12):1676-1685
Tobias NJ, Wolff H, Djahanschiri B, Grundmann F, Kronenwerth M, Shi YM, Simonyi S, Grün P, Shapiro-Ilan D, Pidot SJ, Stinear TP, Ebersberger I, Bode HB
Biosynthesis and function of simple amides in Xenorhabdus doucetiae
Environ Microbiol 2017 Nov;19(11):4564-4575
Bode E, He Y, Vo TD, Schultz R, Kaiser M, Bode HB
Formation and Stability of Lipid Membrane Nanotubes
Non-invasive Raman Spectroscopy and Quantitative Real-Time PCR Distinguish Among Undifferentiated Human Mesenchymal Stem Cells and Redifferentiated Nucleus Pulposus Cells and Chondrocytes In Vitro
Open Biomed Eng J 2017 Jul 31;11:72-84
Ehlicke F, Köster N, Salzig D, Czermak P
Nicotinamide Adenine Dinucleotides Arrest Photoreduction of Class II DNA Photolyases in FADH(˙) State
Photochem Photobiol 2018 Jan;94(1):81-87
Ignatz E, Geisselbrecht Y, Kiontke S, Essen LO
Baculovirus-induced recombinant protein expression in human mesenchymal stromal stem cells: A promoter study
N Biotechnol 2017 Oct 25;39(Pt B):161-166
Sprick G, Weidner T, Salzig D, Czermak P
The components of shear stress affecting insect cells used with the baculovirus expression vector system
Z Naturforsch C 2017 Sep 26;72(9-10):429-439
Weidner T, Druzinec D, Mühlmann M, Buchholz R, Czermak P
Cryo-EM Structure of the TOM Core Complex from Neurospora crassa
Cell 2017 Aug 10;170(4):693-700
Bausewein T, Mills DJ, Langer JD, Nitschke B, Nussberger S, Kühlbrandt W
Resolving the Conformational Dynamics of DNA with Ångstrom Resolution by Pulsed Electron-Electron Double Resonance and Molecular Dynamics
J Am Chem Soc 2017 Aug 30;139(34):11674-11677
Stelzl LS, Erlenbach N, Heinz M, Prisner TF, Hummer G
Changes of mitochondrial ultrastructure and function during ageing in mice and Drosophila
Elife 2017 Jul 12;6
Brandt T, Mourier A, Tain LS, Partridge L, Larsson NG, Kühlbrandt W
Strategies in megasynthase engineering - fatty acid synthases (FAS) as model proteins
Structural characterization of the NAP; the major adhesion complex of the human pathogen Mycoplasma genitalium
Mol Microbiol 2017 Sep;105(6):869-879
Scheffer MP, Gonzalez-Gonzalez L, Seybert A, Ratera M, Kunz M, Valpuesta JM, Fita I, Querol E, Piñol J, Martín-Benito J, Frangakis AS
LuxS-dependent AI-2 production is not involved in global regulation of natural product biosynthesis in Photorhabdus and Xenorhabdus
PeerJ 2017 Jun 26;5:e3471
Heinrich AK, Hirschmann M, Neubacher N, Bode HB
Kinetics from Replica Exchange Molecular Dynamics Simulations
Identification and occurrence of the hydroxamate siderophores aerobactin, putrebactin, avaroferrin and ochrobactin C as virulence factors from entomopathogenic bacteria
Environ Microbiol 2017 Oct;19(10):4080-4090
Hirschmann M, Grundmann F, Bode HB
Structure and in situ organisation of the Pyrococcus furiosus archaellum machinery
Elife 2017 Jun 27;6
Daum B, Vonck J, Bellack A, Chaudhury P, Reichelt R, Albers SV, Rachel R, Kühlbrandt W
Secretion of 2,3-dihydroxyisovalerate as a limiting factor for isobutanol production in Saccharomyces cerevisiae
FEMS Yeast Res 2017 May 1;17(3)
Generoso WC, Brinek M, Dietz H, Oreb M, Boles E
A conserved threonine prevents self-intoxication of enoyl-thioester reductases
Nat Chem Biol 2017 Jul;13(7):745-749
Rosenthal RG, Vögeli B, Wagner T, Shima S, Erb TJ
Position-Dependent Diffusion Tensors in Anisotropic Media from Simulation: Oxygen Transport in and through Membranes
J Chem Theory Comput 2017 Jun 13;13(6):2962-2976
Ghysels A, Venable RM, Pastor RW, Hummer G
Anaerobic Membrane Bioreactor for Continuous Lactic Acid Fermentation
Membranes (Basel) 2017 May 3;7(2)
Fan R, Ebrahimi M, Czermak P
Microbiology: A new language for small talk
Solid-phase enrichment and analysis of electrophilic natural products
Structure and Biosynthesis of Isatropolones, Bioactive Amine-Scavenging Fluorescent Natural Products from Streptomyces Gö66
Angew Chem Int Ed Engl 2017 Apr 24;56(18):4945-4949
Cai X, Shi YM, Pöhlmann N, Revermann O, Bahner I, Pidot SJ, Wesche F, Lackner H, Büchel C, Kaiser M, Richter C, Schwalbe H, Stinear TP, Zeeck A, Bode HB
De novo biosynthesis of trans-cinnamic acid derivatives in Saccharomyces cerevisiae
Appl Microbiol Biotechnol 2017 Jun;101(12):4883-4893
Gottardi M, Knudsen JD, Prado L, Oreb M, Branduardi P, Boles E
Entomopathogenic bacteria use multiple mechanisms for bioactive peptide library design
Nat Chem 2017 Apr;9(4):379-386
Cai X, Nowak S, Wesche F, Bischoff I, Kaiser M, Fürst R, Bode HB
Engineering fungal de novo fatty acid synthesis for short chain fatty acid production
Nat Commun 2017 Mar 10;8:14650
Gajewski J, Pavlovic R, Fischer M, Boles E, Grininger M
The Global Regulators Lrp, LeuO, and HexA Control Secondary Metabolism in Entomopathogenic Bacteria
Front Microbiol 2017 Feb 17;8:209
Engel Y, Windhorst C, Lu X, Goodrich-Blair H, Bode HB
Engineering fatty acid synthases for directed polyketide production
Nat Chem Biol 2017 Apr;13(4):363-365
Gajewski J, Buelens F, Serdjukow S, Janßen M, Cortina N, Grubmüller H, Grininger M
Expanding the product portfolio of fungal type I fatty acid synthases
Nat Chem Biol 2017 Apr;13(4):360-362
Zhu Z, Zhou YJ, Krivoruchko A, Grininger M, Zhao ZK, Nielsen J
A high-throughput expression screening platform to optimize the production of antimicrobial peptides
Microb Cell Fact 2017 Feb 13;16(1):29
Schreiber C, Müller H, Birrenbach O, Klein M, Heerd D, Weidner T, Salzig D, Czermak P
Biosynthesis of the Antibiotic Nematophin and Its Elongated Derivatives in Entomopathogenic Bacteria
Org Lett 2017 Feb 17;19(4):806-809
Cai X, Challinor VL, Zhao L, Reimer D, Adihou H, Grün P, Kaiser M, Bode HB
Optimized expression of the antimicrobial protein Gloverin from Galleria mellonella using stably transformed Drosophila melanogaster S2 cells
Cytotechnology 2017 Apr;69(2):371-389
Zitzmann J, Weidner T, Czermak P
Carbon Nanotubes Mediate Fusion of Lipid Vesicles
ACS Nano 2017 Feb 28;11(2):1273-1280
Bhaskara RM, Linker SM, Vögele M, Köfinger J, Hummer G
Natural Products from Photorhabdus and Other Entomopathogenic Bacteria
Curr Top Microbiol Immunol 2017;402:55-79
Bozhüyük KAJ, Zhou Q, Engel Y, Heinrich A, Pérez A, Bode HB
Analyzing native membrane protein assembly in nanodiscs by combined non-covalent mass spectrometry and synthetic biology
Elife 2017 Jan 9;6
Henrich E, Peetz O, Hein C, Laguerre A, Hoffmann B, Hoffmann J, Dötsch V, Bernhard F, Morgner N
Screening different host cell lines for the dynamic production of measles virus
Biotechnol Prog 2017 Jul;33(4):989-997
Grein TA, Schwebel F, Kress M, Loewe D, Dieken H, Salzig D, Weidner T, Czermak P
A Stably Protonated Adenine Nucleotide with a Highly Shifted pK(a) Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer
Angew Chem Int Ed Engl 2017 Jan 2;56(1):401-404
Wolter AC, Weickhmann AK, Nasiri AH, Hantke K, Ohlenschläger O, Wunderlich CH, Kreutz C, Duchardt-Ferner E, Wöhnert J
NMR resonance assignments for the tetramethylrhodamine binding RNA aptamer 3 in complex with the ligand 5-carboxy-tetramethylrhodamine
Biomol NMR Assign 2017 Apr;11(1):29-34
Duchardt-Ferner E, Juen M, Kreutz C, Wöhnert J
Photorhabdus-nematode symbiosis is dependent on hfq-mediated regulation of secondary metabolites
Environ Microbiol 2017 Jan;19(1):119-129
Tobias NJ, Heinrich AK, Eresmann H, Wright PR, Neubacher N, Backofen R, Bode HB
Three-dimensional CTF correction improves the resolution of electron tomograms



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